rs256920704 SNP Detail

Summary

• ID
  rs256920704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45924656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCTGCGC TGCCCGGGGG
  GCGTTGCAGC AGGGCGGTGG GGCCAGGGGA GTCCGCGATT CCCCGGGGCT CGGGTCAGGG
  TCAGCAGTGG GGACCGGTGC TGGCGGGAGA AGGCAGGGAC CTCAGAGCGG AGGGGTTCCG
  GAAGGGGGGG CTCCGGGAAC TTAGCAGCTG GACATCGGAG AGGTCCCCAG GGCTGTGCGC
  W
  GGGTCGGGGG GGGGGGGTGA CTGGAAAGGA GGCGTTGGAA CTCTCTGGGG GCCGGCGGAC
  TGCACGCCAG GAAGACTCCG GAACCAGCAA TTAGGAAACC ATCAGAACGA GGGCAGGGGC
  ATATGAAATG TGGACCACAG GATGGGGGAG ACGCGCAAAC TGGCTGCCTC AGGCTTCCCA
  GGACGGCTGG GGCATGGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss377446853	MGP_WTSI_9_45821441	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256920704					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377446853	MGP_WTSI_9_45821441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45924656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21700	CpG island 21700	within coordinates
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	668 bp upstream
Rr401349	regulatory region 401349	555 bp downstream
Rr678027	regulatory region 678027	528 bp distal
Rr678028	regulatory region 678028	578 bp distal
Rr678029	regulatory region 678029	1201 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84822	transcription start site region 84822	537 bp downstream
Tssr84823	transcription start site region 84823	498 bp downstream
Tssr89308	transcription start site region 89308	665 bp upstream