rs256924490 SNP Detail

Summary

• ID
  rs256924490
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110950429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGGTGG CTTTCTTTAT
  CATGGCACCA AACAGTCCTA CCCTCAGCAG CTTACCCTGT CCCCAAGGTC ACGGTCGTGG
  CTTGAGCATG TCCCTTGAGG TTTACGTGTT GGAAACCAAG TCCCCAGTGA GACTGTGTTG
  ACAGGCGGGA AGATCCGGAG ACGCCTGACC TCGGCAATGC GTTAATGCTT TCTCTGGAGA
  D
  CATCCACCAT CTGCCTCCCC CTCCTCCCAG CCCAGAGCTA TCTGTATACC TCTGTTCCTT
  CAAGGTTCCT GCCCTCATTG CTCTGTGGTT GCACTGAGCA GGCAGAGATG CCTGACAGGA
  CCCATCCTCA AGGCCGGCCT GCTACTTGGG TGTCAGGCTT GCTAGATGAG CTGTGCCCCA
  TGCCCTGGCA TGAAGGATTC                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387347251	MGP_WTSI_12_112222205	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	A	G	G	G	G	A	A	G	G	G	A	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256924490					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	A	G	G	G	G	A	A	G	G	G	A	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387347251	MGP_WTSI_12_112222205	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110950429 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	1379 bp downstream
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	1379 bp downstream
Rr473047	regulatory region 473047	1924 bp distal
Rr473048	regulatory region 473048	within coordinates
Rr473049	regulatory region 473049	562 bp proximal
Tssr3954	transcription start site region 3954	1410 bp upstream