rs256929587 SNP Detail

Summary

• ID
  rs256929587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21502111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTCTAA AATGTCTCAA
  GCACTTAGCT CTTTCTCTGA CAAGACTGTC TATAGGTAGA ACAGGCTTGG TGGTTCTCAG
  AATCTTGTCC AGAGGCCTCC TGCATTCCAC CTTTATGTGT CCACTCCCAA GTTGCCCCAG
  GGCCCTGGAT TCACATGCTT GCTTTTTGAA CTTTACGTGT ATGACCTGAG CCTCTAGAGA
  Y
  ACTTGATCTG CTCCTGATAA CTGTCCAGCT TTTCCTGTCC ACCCATGGCA ACTCTGTTGG
  TGGACTGGGG AGAAAGCCGC CCTGGCCTTT CTCACTTCTT GGTTGTGGGG CATCCTCTAG
  AACCAAGCGT TCTTCGTCAT AGCCTCCAAT GTCACGTCTG TGCCTGCCTG CTCTTGTTGG
  CTTCTATCCT CACTTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376869877	MGP_WTSI_9_21395259	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256929587					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376869877	MGP_WTSI_9_21395259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21502111 () rs orientation: forward

Symbol	Name	Function Class
Carm1	coactivator-associated arginine methyltransferase 1	1348 bp downstream
Cpgi21447	CpG island 21447	1696 bp proximal
Rr674932	regulatory region 674932	262 bp proximal
Rr674933	regulatory region 674933	1417 bp proximal
Rr674934	regulatory region 674934	1947 bp proximal
Timm29	translocase of inner mitochondrial membrane 29	1907 bp upstream
Tssr84021	transcription start site region 84021	1905 bp downstream
Tssr84022	transcription start site region 84022	1594 bp downstream
Tssr84023	transcription start site region 84023	1571 bp downstream
Tssr88402	transcription start site region 88402	1918 bp downstream
Tssr88403	transcription start site region 88403	1990 bp downstream
Yipf2	Yip1 domain family, member 2	within coordinates