rs256934597 SNP Detail

Summary

• ID
  rs256934597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128512596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGATACT TAGCACTGAG
  GCTTCGAGGG AGGGGAAATG ACACCAGGGC AACGTAGGGG GATGGGGGGG TCTCACTTCC
  TGTTAGGAGA AAGCAAACAG AGTTTCTTTT CTTGTTGTTG CTTTCTTTTT TATGTGCAGC
  CCAGGCTGTC CCACGAGCTC AGTTTGTTAA GACTCCTTTT GAACTTCTGA TTCTCTTACT
  Y
  CCACCCCCAG GGCTGGGATG ATGGCTGCGC ACCACTAGAA CAGTCTGCAG TGTGGTTAGA
  CCCCTGGCTT CTGTGCCTGC TACATCCTCA CCCCCAACCC CCCTCCACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACAAGTAG AGTCTGGTCT
  GGCTTTGCAC AGTCCTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305842	CHEV_4_128296047	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256934597					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128512596 () rs orientation: forward

Symbol	Name	Function Class
Tlr12	toll-like receptor 12	184 bp upstream
Tssr43437	transcription start site region 43437	476 bp upstream
Tssr43438	transcription start site region 43438	206 bp upstream
Tssr43439	transcription start site region 43439	178 bp upstream
Tssr43440	transcription start site region 43440	157 bp upstream