rs256935843 SNP Detail

Summary

• ID
  rs256935843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14949925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATATTTC TTTGTAAAAT
  ATATTAACTA GCTAGATTTA GTGTAAATCA AATGCTTTGT CATTTTGTTT TAAAATTTTG
  TTCTGATTTA TCTCAAAGAC TTTTTGTTAT CATAATTGGA ACATGTCTTA GTAACTTTAT
  ATGTTTTTTT TCTGATTATG TTATATATAC CCATATATAT GAATATATGT GTGTATATGT
  R
  CATATGAATA TGTATATGTA CATATGAATA TACATACATA TATACATAAA TTTCCCCCAC
  CTCCTGGGTT AGAAGGAAGT ACATTTCTTC CCTCTAAAAA CATGAATACA TAAGCATTGG
  TTTTATTTTT ACAAGCCCAG TGTTACTATC TGGCAGCCAG TGAATGACTG CCTGGGAGGA
  ATGTCCCCAG TACAGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357061040	MGP_WTSI_3_14884865	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256935843					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061040	MGP_WTSI_3_14884865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14949925 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	1408 bp upstream
Cpgi12992	CpG island 12992	1150 bp proximal
Rr573721	regulatory region 573721	1681 bp distal
Rr573722	regulatory region 573722	1122 bp proximal
Rr573723	regulatory region 573723	1274 bp proximal
Rr573724	regulatory region 573724	1574 bp proximal
Rr573725	regulatory region 573725	1621 bp proximal
Tssr826	transcription start site region 826	1339 bp upstream
Tssr827	transcription start site region 827	1553 bp upstream
Tssr828	transcription start site region 828	1569 bp upstream
Tssr829	transcription start site region 829	1659 bp upstream
Tssr830	transcription start site region 830	1740 bp upstream
Tssr831	transcription start site region 831	1761 bp upstream
Tssr832	transcription start site region 832	1850 bp upstream
Tssr28466	transcription start site region 28466	1818 bp upstream
Tssr28467	transcription start site region 28467	1950 bp upstream