rs256954400 SNP Detail

Summary

• ID
  rs256954400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69817508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTACAGG AAGAAGGATT
  TATTTTGGCT TGCGGTTTGA AGGGATCCAG TCCACAGTGG CAGGAGTATG ATATAGCTGA
  CACCATGGCA GTCAGAAAGC AGAGAATGTC ACAAAAGGGG TCTGGGCAAT AGAACCTCAA
  GTCCTACCTC CACTCACCTG TGACCCACTC TCTCTTACAA GGCTCCAGTT CCTAAGGGAT
  Y
  CACAACCTTT CCAAACAATG CCATCAGCTG GTGACCAAGT GTTCAAGACT CAAGAATATC
  TTGGAACGTT TCACACTCAA ACCACAACAG TCGCTAACAG TTTTCCTCAT GGATTTTATA
  GTCAAGTGTT GTCTTTATCA CGTTAACTTT TCTCTCTCAT TAGAAATATC ACGAGAAGTC
  AGGTGGAGGT GGCTCACGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085555	CHEV_12_70871721	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256954400					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69817508 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Tssr116525	transcription start site region 116525	1427 bp upstream
Tssr116526	transcription start site region 116526	992 bp upstream