rs256955952 SNP Detail

Summary

• ID
  rs256955952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115737324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCACTCT TTAGGTCTCT
  ATTCAAATGT TACCTTCCCA AAGGGCCTGC TGTGATCAGC CTGCTAGGAC GCTAGCTCCT
  CCTCAGCCTA CCTCAGCCTA CCTCAGCCTG CCTCAGCCTG CCTCAGCCTG CCTCAGCCTG
  CCTCAGCCTG CCTCAGCCTG TTTCAGCCTG CCTCTGCCTG CCTCAGCCTG CCTCTGCCTG
  Y
  CTCAGCCTGC CTCTGCCTGC CTCAGCCTGC CTCAGTCTGC CCTGCTGTTC CACACTCCAC
  ACGTTATTTT CTGGTGCAAA TTTCCTCATT AAGCACGTGC TCTAGGATCT GGGACAGGGA
  CCAATGTGTA GAAGGCATTC AGTCAATTTT GCTGCATGAG AAAGCGATCA GAAAGGTTAG
  CCTGATGTGT GCGTGTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss369759674	MGP_WTSI_6_115710381	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs256955952					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369759674	MGP_WTSI_6_115710381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115737324 () rs orientation: forward

Symbol	Name	Function Class
Tmem40	transmembrane protein 40	within coordinates
Tssr1971	transcription start site region 1971	631 bp downstream
Tssr58324	transcription start site region 58324	1891 bp upstream
Tssr62529	transcription start site region 62529	1363 bp upstream
Tssr62530	transcription start site region 62530	1343 bp upstream
Tssr62531	transcription start site region 62531	1327 bp upstream
Tssr62532	transcription start site region 62532	1959 bp downstream
Tssr62533	transcription start site region 62533	1983 bp downstream