rs256965530 SNP Detail

Summary

• ID
  rs256965530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATTGGG AGTCCGGGAA
  AGAAGGTTGG GAAGAGGGAG AGCCAGGGAA GTGCTGCTCC GGATTGCTAT AAAGACCTAA
  ATGTTTACGG AAGTTCTATG GTTCCGTTGC TAGGAGACTA GAGGTTCTAG AACTAAGGAC
  AATGTCCTAG TGTGCCATAC TGGCTCTCCT GATTCCTTCT TGGAGGCGGT GACCCCAGAG
  W
  TATATCAAGG CATTTAGGAG ATGGAAAGGC GTTAGGGTGG AACTTGGGCT CTAATCCTCC
  CACCACCAGG GCGGCGCTAG AAGCAAGCGG CAGGCATGCT CGGAGCCTCT CTAGCCACCT
  CTTCCCAGCC TGGGTCCCGG AGAGCGACGA GGATCGCAAG CGTCGCGGGC GGGGAAGCGA
  TGTGGGCTGT ACTAAGTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373078370	MGP_WTSI_7_134119464	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256965530					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373078370	MGP_WTSI_7_134119464	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase			mRNA-UTR
Cdiptos	CDIP transferase, opposite strand			Coding-NonSynonymous
				Intron
Cpgi19724	CpG island 19724			within coordinates
Gm73941	predicted gene, 73941			912 bp downstream
Rr368439	regulatory region 368439			16 bp upstream
Rr655656	regulatory region 655656			173 bp distal
Rr655657	regulatory region 655657			within coordinates
Tssr2401	transcription start site region 2401			630 bp upstream
Tssr69140	transcription start site region 69140			1581 bp downstream
Tssr69141	transcription start site region 69141			326 bp downstream
Tssr69142	transcription start site region 69142			329 bp upstream
Tssr69143	transcription start site region 69143			388 bp upstream
Tssr69144	transcription start site region 69144			457 bp upstream
Tssr69145	transcription start site region 69145			482 bp upstream
Tssr69146	transcription start site region 69146			574 bp upstream
Tssr69147	transcription start site region 69147			597 bp upstream
Tssr69148	transcription start site region 69148			660 bp upstream
Tssr74865	transcription start site region 74865			534 bp upstream
Tssr74866	transcription start site region 74866			107 bp upstream
Tssr74867	transcription start site region 74867			103 bp upstream
Tssr74868	transcription start site region 74868			142 bp downstream
Tssr74869	transcription start site region 74869			174 bp downstream
Tssr74870	transcription start site region 74870			182 bp downstream