rs256966849 SNP Detail

Summary

• ID
  rs256966849
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAATCTT AGGCCACGAC
  CTTACCCATT TCTGAGTCTC AGCTTCCCCC ACTGGAAAAC AAGGGGTTGG AGCAGATGAT
  ACCCTTTGGC TCTGACCTTC TGTGATGCAC TCTTGAGAAT AATAATTAAG TAATTGAAGT
  TTATGCATGT AGCATATTGC TCATAGTTCC TTAATATCAC TTAGGTCATC CTGTTTTGAG
  W
  TCTAGTAAAT TGTATCTGTG TCTAATGTCT GTCTCCTCTA CCAACTGCTA AGTCCTTTGA
  GGTTGAATCT GATTCATCTC TGTGTCCACC CACTGGGCCT GGCACAGGCA GGTCTGAGCA
  CACATTTGTG TTCAGTAAAC ATCTGTGGAA TGAAATTGCT TCAATAAATC ACTAATATGT
  GTACGGTCAT CGGCATCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353683	CHEV_7_109400927	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256966849					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1429 bp distal
Rr652563	regulatory region 652563	1800 bp distal
Rr652564	regulatory region 652564	1471 bp distal
Tssr73947	transcription start site region 73947	1934 bp upstream
Tssr73948	transcription start site region 73948	1898 bp upstream
Tssr73949	transcription start site region 73949	1865 bp upstream
Tssr73950	transcription start site region 73950	1818 bp upstream