rs256967973 SNP Detail

Summary

• ID
  rs256967973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32696110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTACATT AAATAAATAA
  ATAAATAAAT AAATCTTAAA AAAAAAAAAA AGAACCAATC TACAATTCTT TTCTGTAGTT
  TACTTCTACA AATGAGCAGA GAGTGCAGAA GTTATAACTA ATGGCAGAGG GCTAATGCAG
  GGAGAAACAT CTTGTGCTTA GAGCATCTCA GAAATGTAAA GATAGGGTTT CTGGCCTCAA
  W
  CTCAGAGATC TGCCTGCCTC TGCTGGGATT AAAGTTGTGC ACCACCACCA CCACCCAACT
  CAGGGTTGTA AAGACTCTTA GGATAACTTA TGCAGACTAA GGCCTATAGC ATTCCATAAG
  GTAATATAAC AAGTGACGGA AGAGAATGAT AAATGCTGTA CTCAATAAAC CCAGGAACGG
  TAGAAGCTTT CTTGTTGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395868133	MGP_WTSI_16_32875826	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256967973					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395868133	MGP_WTSI_16_32875826	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32696110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	1606 bp proximal
Fyttd1	forty-two-three domain containing 1	1760 bp upstream
Rr514841	regulatory region 514841	219 bp distal
Rr514842	regulatory region 514842	171 bp proximal
Rr514843	regulatory region 514843	1219 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140832	transcription start site region 140832	1869 bp downstream
Tssr140833	transcription start site region 140833	1897 bp downstream
Tssr140834	transcription start site region 140834	1947 bp downstream
Tssr140835	transcription start site region 140835	1983 bp downstream