rs256975342 SNP Detail

Summary

• ID
  rs256975342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144940243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAAAAT CAATTTATTT
  AAAAAAATTT ATTACATTTA TGGTATGTGA GTGTGTGTGC AAGAATGTGA TGTGTGCACA
  TATGCAGAAG CATGTATGGG GTGGTGGTCA GAGGACAACT TGCAGGAATC AGGTCTCTTC
  TACCTTATGG TCAGGGATCC AACTCAGGTC ATCAGGTTTG TCCGCAAACT GCCTTACCCA
  Y
  TGAGCCATCT TGCCAGTTCA AAACTAACTT ATTAAATAGG AAGGGGGAGC CCTTGGAGAG
  ATGTCTTAGT GGATAAAATG CAGGTATACA AGTGTGAGGA CCAGAATTCA GATCTCTAGT
  ATTCATGTAA ATGTCGGGCA GGTATGGCAG CCTGCCTGTA ACCTGAGCAC TCCATAGGCA
  GACAGAGATC CCTGAAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363595750	MGP_WTSI_4_144803576	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256975342					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595750	MGP_WTSI_4_144803576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144940243 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	558 bp proximal
Rr103536	regulatory region 103536	444 bp distal
Rr103537	regulatory region 103537	12 bp proximal
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr40194	transcription start site region 40194	256 bp upstream
Tssr40195	transcription start site region 40195	608 bp upstream
Tssr44484	transcription start site region 44484	888 bp upstream
Tssr44485	transcription start site region 44485	822 bp upstream
Tssr44486	transcription start site region 44486	within coordinates
Tssr44487	transcription start site region 44487	37 bp downstream
Tssr44488	transcription start site region 44488	140 bp downstream
Tssr44489	transcription start site region 44489	232 bp downstream
Tssr44490	transcription start site region 44490	525 bp downstream
Tssr44491	transcription start site region 44491	692 bp downstream
Tssr44492	transcription start site region 44492	917 bp downstream
Tssr44493	transcription start site region 44493	1078 bp downstream
Tssr44494	transcription start site region 44494	1312 bp downstream
Tssr44495	transcription start site region 44495	1373 bp downstream
Tssr44496	transcription start site region 44496	1442 bp downstream
Tssr44497	transcription start site region 44497	1565 bp downstream
Tssr44498	transcription start site region 44498	1690 bp downstream
Tssr44499	transcription start site region 44499	1733 bp downstream
Tssr44500	transcription start site region 44500	1821 bp downstream
Tssr44501	transcription start site region 44501	1881 bp downstream
Tssr44502	transcription start site region 44502	1977 bp downstream