rs256977316 SNP Detail

Summary

• ID
  rs256977316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173109041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTGCAG CCCCTGAGTC
  GGGGGCAGCC CACCCTGGAA GGGGAGCCTG ATTCAAGAGA ATTGTCTCTT CTACCTGTCT
  CCCGCTCCCA GGCAGAGTCC CACTTAGCAT CGACGCCTAC ACCCCCATGC CGTTCACCGA
  ATGCTTGCTT CTCACTGAAG AGCTTCACGG ATAACTTCTC TAATAATCAC TTCAGCACAG
  R
  AACTAGGAGG CTCTCAGAAC AGCAAGAGCT ACAGCAAGGT GGGCTGAGCT TACCAAAGAT
  CCCATGGTTT GAGACTGCCA GAGCCAGATA GATCCCTTAG GGACCTTTCT GTTTGGTGGG
  ACACAGTTTG GTGGGACACT TTTTGGTAGG ACTGTTTGGT GGGACACTGC TTGGTGGGAC
  ATGGTTTGGT GGGACACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320622166	CHEV_2_173092749	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256977316					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173109041 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1638 bp distal
Rr571917	regulatory region 571917	96 bp distal
Tssr27982	transcription start site region 27982	1309 bp upstream