rs256999135 SNP Detail

Summary

• ID
  rs256999135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60060006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAAGTAC AGAGAGATGA
  GGGGGTTGGT ATCTAGTGAC CCATAGCAAA TCAACTGATA CTTGTGTCAA GAACATCATT
  TGATTAGTTT CATTAGCCCC CTAAAATTAG TCACATTTCC AAAAGACCCC TCGAAAATCA
  TGAAGGTTTT TTCCCTTTCA CTGGAAAAGG AGTTAGAAAT GGTGCTGGTT ATTTCAAGTG
  Y
  TGCAATGAGT CACACGGGAA ATATTGTCAA ATCCAAAGAC GTTCACAGGC AGTATGTTAG
  ATTTGTATGA GTAAACATTG GTAATGTGAA TGTTTTAAAC ATTGTACTCT GCATGAGAAA
  GATGAAGATG ATGGTAAGCG TTTCTACTGC CCGTGATAGA GCTTTCTGCA TCAGACTCCT
  GCAACTTTGT TTACTGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394227335	MGP_WTSI_15_60019712	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256999135					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394227335	MGP_WTSI_15_60019712	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60060006 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	625 bp upstream
Gm41331	predicted gene, 41331	409 bp downstream
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	547 bp distal
Tssr4605	transcription start site region 4605	948 bp upstream
Tssr134460	transcription start site region 134460	1260 bp upstream
Tssr134461	transcription start site region 134461	1126 bp upstream
Tssr134462	transcription start site region 134462	1024 bp upstream
Tssr134463	transcription start site region 134463	974 bp upstream
Tssr134464	transcription start site region 134464	874 bp upstream
Tssr134465	transcription start site region 134465	826 bp upstream
Tssr134466	transcription start site region 134466	817 bp upstream
Tssr134467	transcription start site region 134467	774 bp upstream
Tssr134468	transcription start site region 134468	742 bp upstream
Tssr134469	transcription start site region 134469	694 bp upstream