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rs257018372 SNP Detail
Summary
  • ID
    rs257018372
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:49023250 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCACTTTGAT GTATTATTAG
TGAAGTGTTA TTTTAAGAGG AACAAAATTG GCTCATTATT AACAAGGCTG CTGAATTCTC
AGTATATTAC CAGAGGGCCA CGTCAATGGA TGAGTGGGAG AATACAAGCC CAGCATGTAG
ACATTAAGCA AAATACACAC ACACCCCACA CACAAATAAC ATACACACAC ACCAGACATA
M
ACATACATAC TGTACATACC ACACACATAC ACCATGCATG CCATATACTT GAAACATACA
TACATACATA CACACACACA CACACACACA CACACACACA CCACATACCA CCACCACCAC
CTCCAGGAGC CAACTGAGGC TAAATTTTCA AAATCTGCTC CAGTTGAGTA ACTCCTGGAT
ATCTAAAGGT TTTGTCCTTT                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368235198 MGP_WTSI_6_48996315 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257018372 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368235198 MGP_WTSI_6_48996315 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49023250 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D6Dcr8 DNA Segment, Chr 6, Derry C. Roopenian 8 33 bp proximal
D6Mit142 DNA segment, Chr 6, Massachusetts Institute of Technology 142 within coordinates
Gm56981 predicted gene, 56981 within coordinates
Gpnmb glycoprotein (transmembrane) nmb within coordinates
Tssr56319 transcription start site region 56319 999 bp downstream
Tssr56320 transcription start site region 56320 959 bp downstream
Tssr56321 transcription start site region 56321 945 bp downstream
Tssr56322 transcription start site region 56322 927 bp downstream
Tssr56323 transcription start site region 56323 891 bp downstream
Tssr56324 transcription start site region 56324 861 bp downstream
Tssr56325 transcription start site region 56325 705 bp downstream
Tssr56326 transcription start site region 56326 690 bp downstream
Tssr56327 transcription start site region 56327 636 bp downstream
Tssr56328 transcription start site region 56328 558 bp downstream
Tssr56329 transcription start site region 56329 482 bp downstream
Tssr56330 transcription start site region 56330 311 bp downstream
Tssr56331 transcription start site region 56331 266 bp downstream
Tssr56332 transcription start site region 56332 193 bp downstream
Tssr56333 transcription start site region 56333 155 bp downstream
Tssr56334 transcription start site region 56334 145 bp downstream
Tssr56335 transcription start site region 56335 125 bp downstream
Tssr56336 transcription start site region 56336 98 bp downstream
Tssr56337 transcription start site region 56337 75 bp downstream
Tssr56338 transcription start site region 56338 59 bp downstream
Tssr56339 transcription start site region 56339 45 bp downstream
Tssr56340 transcription start site region 56340 134 bp upstream
Tssr56341 transcription start site region 56341 394 bp upstream
Tssr56342 transcription start site region 56342 426 bp upstream
Tssr56343 transcription start site region 56343 976 bp upstream
Tssr56344 transcription start site region 56344 990 bp upstream
Tssr56345 transcription start site region 56345 1008 bp upstream
Tssr56346 transcription start site region 56346 1045 bp upstream
Tssr56347 transcription start site region 56347 1083 bp upstream
Tssr56348 transcription start site region 56348 1109 bp upstream
Tssr56349 transcription start site region 56349 1432 bp upstream
Tssr56350 transcription start site region 56350 1459 bp upstream
Tssr56351 transcription start site region 56351 1489 bp upstream
Tssr56352 transcription start site region 56352 1502 bp upstream
Tssr56353 transcription start site region 56353 1571 bp upstream
Tssr56354 transcription start site region 56354 1586 bp upstream
Tssr56355 transcription start site region 56355 1611 bp upstream
Tssr56356 transcription start site region 56356 1629 bp upstream
Tssr56357 transcription start site region 56357 1641 bp upstream
Tssr56358 transcription start site region 56358 1659 bp upstream
Tssr56359 transcription start site region 56359 1674 bp upstream
Tssr56360 transcription start site region 56360 1711 bp upstream
Tssr60846 transcription start site region 60846 924 bp upstream
Tssr60847 transcription start site region 60847 841 bp upstream
Tssr60848 transcription start site region 60848 19 bp downstream
Tssr60849 transcription start site region 60849 1013 bp downstream
Tssr60850 transcription start site region 60850 1068 bp downstream
Tssr60851 transcription start site region 60851 1538 bp downstream
Tssr60852 transcription start site region 60852 1581 bp downstream
Tssr60853 transcription start site region 60853 1591 bp downstream
Tssr60854 transcription start site region 60854 1610 bp downstream
Tssr60855 transcription start site region 60855 1643 bp downstream
Tssr60856 transcription start site region 60856 1681 bp downstream
Tssr60857 transcription start site region 60857 1710 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory