rs257025560 SNP Detail

Summary

• ID
  rs257025560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137444862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGCTGCT GCTCCCTGCA
  TCCACAACCC TCCCTCGCTC TCCACAGGCC TCCAGGCTCA TTGTCACCTT TGACGAACAT
  GTTATCAGCA ATAACTTCAA GTTTGGAGTC ATTTATCAGA AGCTTGGCCA GGTGTGTCTG
  CCCTTCTTCT CTCCCCCCCC CCCCCCCCCC CCGCCTGGTC CTGCGGCCCA CCCCACCCCA
  Y
  CTCGCCCTCA GCCGTCGCCT GCAGGGCACT CCGTTTCCCA GGAGCTTGGG GACTGCTCAT
  GGCCACTCTG GGAGGAAGTA GGGCTGAGGG AGGGCCACTC GGGAGCTGCC ACCGTGTGAC
  CTTGCCCCCG TGTGGTCTCC AGACCTCTGA GGAAGAACTA TTCAGTACCA ACGAGGAAAG
  TCCTGCCTTC GTGGAATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363422099	MGP_WTSI_4_137273466	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257025560					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363422099	MGP_WTSI_4_137273466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137444862 () rs orientation: forward

Symbol	Name	Function Class
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1939 bp proximal
Rr96794	regulatory region 96794	1639 bp distal
Rr100343	regulatory region 100343	1738 bp proximal
Tssr39776	transcription start site region 39776	196 bp downstream
Tssr39777	transcription start site region 39777	170 bp downstream
Tssr39778	transcription start site region 39778	1663 bp upstream
Tssr39779	transcription start site region 39779	1693 bp upstream
Tssr39780	transcription start site region 39780	1969 bp upstream