rs257027284 SNP Detail

Summary

• ID
  rs257027284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6727721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTTTTT ACCTGGGGCT
  ACCCCTCTGA CAATAAAGCA AGCCAAATAC CCTTTCCTGA TAAACCCCCC CCCCCCCCCC
  AACTAACACA CTGTCTATAC CCCAGGTCTT CTCTTTAGAA TGCTAAATGC TTCTGAAGAT
  GCCCTTCTTA GTTTACTTCA TCAGTCTGTG GAAATGCAAA GAGCCGGACA AGTGCAAAGC
  Y
  AGCAGCCCAG GAGCTGCAGC CTTTTAAGCA GGCGACCACT GCACTAGTTA AGCATGTCAG
  AAAGAAGAAA CACTAAGCAG GTGTGATTTC ACTGTCGCCT CAGAGAAATA CCAAAAATGC
  ACTAGAAAAA GATCTAAAGC AGAGAGAGTT CCTTATTTTG TTGCCAGAAA CAGACAAACA
  AAAAGAACAC TTTAAAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352985695	MGP_WTSI_2_6643956	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257027284					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352985695	MGP_WTSI_2_6643956	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6727721 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	120 bp distal
Tssr16031	transcription start site region 16031	1729 bp downstream
Tssr22456	transcription start site region 22456	1836 bp upstream
Tssr22457	transcription start site region 22457	1281 bp upstream
Tssr22458	transcription start site region 22458	1262 bp upstream
Tssr22459	transcription start site region 22459	1226 bp upstream
Tssr22460	transcription start site region 22460	1043 bp upstream
Tssr22461	transcription start site region 22461	1007 bp upstream
Tssr22462	transcription start site region 22462	872 bp upstream
Tssr22463	transcription start site region 22463	729 bp upstream
Tssr22464	transcription start site region 22464	674 bp upstream
Tssr22465	transcription start site region 22465	661 bp upstream
Tssr22466	transcription start site region 22466	649 bp upstream