rs257028434 SNP Detail

Summary

• ID
  rs257028434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCAGAAT TTCTAGAGAA
  GCTGAGGCTC AGCACCAAAA GCCATCCCTT ACCAATGAAA GAGGGCTGGA AGAGAGTCTC
  TGGACAGCGG AAGCGCTCGT TGCCAATGGT GATGACCTGG CCGTCAGGAA GTTCATAGCT
  CTTCTCCAGA GAGGAGGAAG ATGCAGCTGT GGCCATCTCG TTCTCAAAAT CCAGGGCGAC
  R
  TAACACAGTT TTTCTTTTAT GTCACGGACA ATTTCACGTT CAGCTGCAGA GACAGAGGGC
  TTCATAGTCA AGCTCTGAAG AAAGGATCAA ATATGGGGAA GTAGGTCTAT CTACCAATGA
  AGCAAAAGCA ACAGGCATAT GCTGTGTCAG ATAACACACA CACACACACA CACACACACA
  CACACACACA CACTTACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315562	MGP_WTSI_2_113875053	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257028434					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315562	MGP_WTSI_2_113875053	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879798 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	1508 bp distal
Tssr600	transcription start site region 600	1748 bp upstream
Tssr601	transcription start site region 601	1737 bp upstream
Tssr602	transcription start site region 602	1160 bp downstream
Tssr19430	transcription start site region 19430	1910 bp downstream
Tssr19431	transcription start site region 19431	1826 bp downstream
Tssr19432	transcription start site region 19432	1743 bp downstream
Tssr19433	transcription start site region 19433	1153 bp downstream
Tssr19434	transcription start site region 19434	1109 bp downstream
Tssr19435	transcription start site region 19435	139 bp downstream
Tssr19436	transcription start site region 19436	233 bp upstream
Tssr19437	transcription start site region 19437	968 bp upstream
Tssr19438	transcription start site region 19438	1051 bp upstream
Tssr19439	transcription start site region 19439	1116 bp upstream
Tssr25660	transcription start site region 25660	1999 bp upstream
Tssr25661	transcription start site region 25661	1978 bp upstream
Tssr25662	transcription start site region 25662	1875 bp upstream
Tssr25663	transcription start site region 25663	1849 bp upstream
Tssr25664	transcription start site region 25664	1808 bp upstream
Tssr25665	transcription start site region 25665	1700 bp upstream
Tssr25666	transcription start site region 25666	1146 bp upstream
Tssr25667	transcription start site region 25667	1103 bp upstream
Tssr25668	transcription start site region 25668	1076 bp upstream
Tssr25669	transcription start site region 25669	1013 bp upstream
Tssr25670	transcription start site region 25670	75 bp upstream
Tssr25671	transcription start site region 25671	12 bp upstream
Tssr25672	transcription start site region 25672	within coordinates
Tssr25673	transcription start site region 25673	31 bp downstream
Tssr25674	transcription start site region 25674	235 bp downstream
Tssr25675	transcription start site region 25675	283 bp downstream
Tssr25676	transcription start site region 25676	320 bp downstream
Tssr25677	transcription start site region 25677	347 bp downstream
Tssr25678	transcription start site region 25678	1019 bp downstream
Tssr25679	transcription start site region 25679	1028 bp downstream
Tssr25680	transcription start site region 25680	1041 bp downstream
Tssr25681	transcription start site region 25681	1088 bp downstream
Tssr25682	transcription start site region 25682	1170 bp downstream
Tssr25683	transcription start site region 25683	1177 bp downstream
Tssr25684	transcription start site region 25684	1268 bp downstream
Tssr25685	transcription start site region 25685	1638 bp downstream
Tssr25686	transcription start site region 25686	1981 bp downstream