rs257049914 SNP Detail

Summary

• ID
  rs257049914
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAAAGAT TTATTTCTAA
  TTATGTTGAA TGTTTGTGTA TGTTTGGGGA GGGGATGGGA GTGGGCAGGG TATATGCATG
  TGAGGGCAGG TGCCCACAAA AGCCAGAAGG GGCATCAGAT ACCCTGGAGC TAGAGTTATA
  GGTGGTTGTC ATCCACCTAA CATGGGTGCT GGGAACTGAA CCCAAGTTCT CTGCAAGAGC
  W
  GCATGTAGTT TTAACTATTA AGCCATCCCT CTAGGCCACT ATGGGTTATT TCTGATATAA
  TGCTTTTAGT CATGTCTAAT TATGTTTTCC ATGTTAATGA TTTGCCTTTT CTTTCTGATT
  TCTTTAAGAT TTTCTCATTG TTGGTTTTTG TGTTATTTTG CCACACTGGG TCTAGATTTG
  TCTCGCTTCT AGATCTACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956114	CHEV_3_127393806	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257049914					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484537 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	1047 bp downstream
Tssr35587	transcription start site region 35587	105 bp upstream
Tssr35588	transcription start site region 35588	403 bp downstream
Tssr35589	transcription start site region 35589	1658 bp downstream