rs257059765 SNP Detail

Summary

• ID
  rs257059765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70910377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCACCA ATCGCTGGCG
  CCTTGGGGCC GCTCACCCAC CAATCAAGAG TTGCGCCTCT GCGTCGGTCC ATCCTTACTT
  CTCCGCCTAC CAACGCAGAG AGAAGGACCA GTTCCGTCCG CCAATCCCTG CCGGCCACAG
  CTAGCTTTCC CTCCTTGTCG CCTTCCTTTT ACCAATCGCA GTGGCTCCTT TTGACCCACG
  R
  CTAGCCAATC AGGAGTGCGA TCCAGCCCGC CTTGGCGTTC GTTCGCAGAG GCAGGTCTCA
  GTCGATTCGG AGGAGCCGGT GTTACCGCCT TCTTCCAGCC GCTGAGTGTA GCTTGAAGGA
  AGTGGCGGGA AGCCGGTGTG GGGCGGAATC CATCACTCCC GGGATCGCTT CGGTAGGGGC
  TGTGTGCTCT CCGAGGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323738904	CHEV_11_70833053	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257059765					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70910377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	within coordinates
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	60 bp upstream
Rr369277	regulatory region 369277	228 bp upstream
Rr402697	regulatory region 402697	45 bp downstream
Rr450471	regulatory region 450471	within coordinates
Rr450472	regulatory region 450472	71 bp proximal
Rr450473	regulatory region 450473	280 bp proximal
Tssr102806	transcription start site region 102806	19 bp upstream
Tssr102807	transcription start site region 102807	42 bp upstream
Tssr102808	transcription start site region 102808	75 bp upstream
Tssr102809	transcription start site region 102809	90 bp upstream
Tssr102810	transcription start site region 102810	317 bp upstream
Tssr102811	transcription start site region 102811	344 bp upstream
Tssr109052	transcription start site region 109052	1030 bp upstream
Tssr109053	transcription start site region 109053	284 bp upstream
Tssr109054	transcription start site region 109054	261 bp upstream