rs257062709 SNP Detail

Summary

• ID
  rs257062709
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136347494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCAAGA TTTTAAACAA
  AACAAGGACA GGCCAGGCTG TGGTGGCCTC ACCTTTCATC CCAGCACTCT GGAGGCAGAG
  GCAGGCAGAT CTCTGAGATC AAGGCCAGCC TGGTCTACAG AGCAAGTTCC AGGCCAGCCA
  GGGCTACACA GAGAAACCCT GACTCAGAAA ACCAACCAAC CGACCAAACA AACAAACAAG
  C
  AAGCAAAAAT GGCAAGTTTT ATAAACCCAG AAACTAAAAG ACAGTTCTGA GAAGGGAGTT
  ACCTGCTTCC TGAGAGGAGC GGCCCAGGAA AGGAGGTAAT TACAGTGACT GTGTTTGTTG
  GGCGCTGTTG GCATGCAGTG GCCCGTGTGC TCTCCCTGCG ATCACGCTCC TATTCAGTCT
  TCACTCCCAC ACCACTAGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
ss363394931	MGP_WTSI_4_136176098	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
rs257062709					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363394931	MGP_WTSI_4_136176098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136347494 () rs orientation: forward

Symbol	Name	Function Class
Rr86434	regulatory region 86434	907 bp proximal
Rr103033	regulatory region 103033	95 bp distal
Rr106544	regulatory region 106544	1263 bp proximal
Rr398615	regulatory region 398615	1142 bp upstream