rs257063645 SNP Detail

Summary

• ID
  rs257063645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGCAAC CCCCTATGTC
  ATCTCTCTAG CCCAGAAGAC ACAAGCTGGC ACCCAGAGTC TCTGTCACTT TGCCTTGTAT
  GAAGCTAAAT GTGGAACAAA AGGGAGGCCG GCTGCTATGT GTCAAATGCC AAATGCCAAA
  GTAGGAAAGA CCACACCTGG CCCAAGAAGG AAAGAGCCCT TCCCTCAGCA AGCAGGTGGC
  K
  ACTAAAAGCC AGAACGAAAA AGATAAGCCA AGAAGAAATC CCAGCTCAGT GACTGTCAGA
  GTGGGTGTGG CCTGGAGGCA GAGGGCTGTA CTGCAAGATC TCTCTCGGTG GATGTCCCCT
  ACCCCCACCC AGCCCCAAGG TCTGCTGATG ACAGTCAGCT GTCCAGAGCC GTGTAAAAAT
  AAATTCATAC ACACGGAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390185	MGP_WTSI_12_113911135	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257063645					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390185	MGP_WTSI_12_113911135	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			338 bp proximal
Gm30150	predicted gene, 30150			1564 bp upstream
Rr473550	regulatory region 473550			1371 bp distal
Rr473551	regulatory region 473551			870 bp distal
Rr473552	regulatory region 473552			within coordinates
Rr473553	regulatory region 473553			131 bp proximal
Rr473554	regulatory region 473554			1342 bp proximal
Rr473555	regulatory region 473555			1455 bp proximal
Rr473556	regulatory region 473556			1498 bp proximal
Tssr115391	transcription start site region 115391			1488 bp upstream
Tssr117874	transcription start site region 117874			1726 bp upstream
Tssr117875	transcription start site region 117875			1347 bp upstream
Tssr117876	transcription start site region 117876			880 bp upstream
Tssr117877	transcription start site region 117877			1092 bp downstream
Tssr117878	transcription start site region 117878			1151 bp downstream
Tssr117879	transcription start site region 117879			1269 bp downstream
Tssr117880	transcription start site region 117880			1419 bp downstream
Tssr117881	transcription start site region 117881			1450 bp downstream
Tssr117882	transcription start site region 117882			1829 bp downstream
Tssr117883	transcription start site region 117883			1850 bp downstream
Tssr117884	transcription start site region 117884			1902 bp downstream