rs257069807 SNP Detail

Summary

• ID
  rs257069807
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57956649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTTTCCA GGGGGCGGAG
  CCAGAGTCGG CTACTAGTGC AGCCTGGGGA CTGTCCTAGC GCTGGCCTCA CTCCTGGCTT
  CCCCGCCCCA CTCTAAGCTG CCGAACAAGA ACCTTAGTTT ATAAGGGGCG GAGCTAGCAC
  AGGCTCCTGG AGCAGCTTCG GGTTTTTCCA GGCTCCAGAC GCCGCGCGGC AGCTACCCCT
  T
  AGAGCCAACT TCCAGCTGCC TCAAGGGCAC TTTAACAGCG AACAGCGCCG GGGTAGATCA
  CGGTCCTCTC TCACACCGTA GAGTCCTTCT GTAATCACAC TGCCCATGCC CCAAACTAGA
  CCTAAGTCAG ATACTTCCAG ATTGGGGCTG GGGACAGTCC CTAGGACTGC CCAGGCAGAG
  GTGTATCCTT AGACTAGGGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136108	CHEV_4_57969521	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257069807					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57956649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	within coordinates
Gm35344	predicted gene, 35344	103 bp upstream
Gm57068	predicted gene, 57068	within coordinates
Rr398279	regulatory region 398279	40 bp downstream
Rr592848	regulatory region 592848	249 bp distal
Rr592849	regulatory region 592849	863 bp distal
Rr592850	regulatory region 592850	14 bp distal
Rr592851	regulatory region 592851	201 bp distal
Rr592852	regulatory region 592852	85 bp proximal
Rr592853	regulatory region 592853	586 bp proximal
Tssr1183	transcription start site region 1183	291 bp upstream
Tssr1184	transcription start site region 1184	225 bp upstream
Tssr37396	transcription start site region 37396	23 bp downstream
Tssr37397	transcription start site region 37397	275 bp upstream
Tssr41866	transcription start site region 41866	351 bp upstream
Txn1	thioredoxin 1	238 bp upstream