rs257069886 SNP Detail

Summary

• ID
  rs257069886
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80544513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTATG CATGTGTGTG
  TACCATGTGC AAGCAGTGCC TCACAGGCCA GACCAGGTGT CAGATCCCCC TGAAACCGCT
  ATGGGTAGAA CCAGCTAGAA GCTGAACCCT ACTGAAAGGG CTGCCACTGC TTTTAACCAC
  TGAGCCATGA CTCAGGCCCA GGGTTTCTTT CTTATTTAAT GCTTTAAGTG AAGGTTTCAC
  W
  TCTCTTTCCC CATTCAGACC CAGCTACAGA ATGATAGAAT TTATGGCTAT GTGTGCCTGG
  AAGTGATCAG TCGCTTCTAG AGCAGAAATT CTAGTGCTCT GGGTAGAAGG ATTTGTTGAG
  GCTACCTCCT GGCAGGACCA AACCTGTGTT AAAAACTGCA GGTCTACTTT GACAGATAGT
  TCTCACCAAG CCATCTGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399178396	MGP_WTSI_17_80636424	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	T	A	T	T	T	T	T	A	T	T	A	A	T	T	T	A	T	T	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257069886					SNP	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	T	A	T	T	T	T	T	A	T	T	A	A	T	T	T	A	T	T	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399178396	MGP_WTSI_17_80636424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80544513 () rs orientation: forward

Symbol	Name	Function Class
Dhx57	DExH-box helicase 57	1220 bp downstream
Rr405469	regulatory region 405469	within coordinates
Rr405470	regulatory region 405470	408 bp upstream
Rr531450	regulatory region 531450	within coordinates
Rr531451	regulatory region 531451	207 bp proximal
Rr531452	regulatory region 531452	375 bp proximal