rs257078905 SNP Detail

Summary

• ID
  rs257078905
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10377817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGGAG AAAAACCGAA
  GCGCAGAGGC TGGAGAGGAA ATGAGAAGCA CTTGAGCGAA GCCTCTAACT CCTCTCTGCG
  CTCTGGGTTG TCATTTTTTC TCATTCCCCA CCCCCTTCCC CCCGACTCCC GGCTCTGAAA
  AGCCAGGCCT TGCGGGAGTC TGTCCGGAGT TGCAAAGTGA CCTCGTCCTC CTCCGGGTGC
  W
  GTCTGTTCCC TCCCCGCCGC CCACCTTCCT CGTTTATGCA CTCGCTTTAG CGGCGCAGCC
  TCCTCTGCCA CCTACCCCGG GTTCCCGCGT CTCCTCGGAG CCGGGGTCTC CCTCTTTTGG
  TGTGCATTGG GGGGGGGGGG GGGCTAGGAG GTTGTAGAGA GGAAAGTGAT GGCGTGGAGA
  GAATTGGAAA GCAGCAAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353068967	MGP_WTSI_2_10294633	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257078905					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353068967	MGP_WTSI_2_10294633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10377817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	1288 bp distal
Cpgi11194	CpG island 11194	318 bp distal
Cpgi11195	CpG island 11195	837 bp proximal
Cpgi11196	CpG island 11196	1638 bp proximal
Gm74532	predicted gene, 74532	333 bp upstream
Rr551681	regulatory region 551681	546 bp distal
Rr551682	regulatory region 551682	344 bp distal
Rr551683	regulatory region 551683	463 bp distal
Rr551684	regulatory region 551684	within coordinates
Rr551685	regulatory region 551685	1158 bp proximal
Rr551686	regulatory region 551686	1571 bp proximal
Rr551687	regulatory region 551687	1779 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16084	transcription start site region 16084	1718 bp downstream
Tssr16085	transcription start site region 16085	1651 bp downstream
Tssr16086	transcription start site region 16086	1392 bp downstream
Tssr16087	transcription start site region 16087	659 bp downstream
Tssr16088	transcription start site region 16088	509 bp downstream
Tssr16089	transcription start site region 16089	442 bp downstream