rs257079219 SNP Detail

Summary

• ID
  rs257079219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46137299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTGAG AGCAGATTCC
  CAATAAACCC ATTTTTAATA TATTCTCATC TGGCTCGAAT TGGCTCATTT CAGGCAACTG
  GAGCCAGATG AGAATATATT AAAATCCTTT CTTGGAGGAC TCTTCCAAAG TCTTACTCTG
  GATAATCTGT CCTCAATAGC AAAGGATGAG TGATAATTTG TACCACTCGC CCTTTGCTAT
  Y
  AAGTCCGTCA GACTACAGTA CCTGTGATCA TTCCTGAGAG GGTCACTTAG GGCTTCAGTA
  TCCTGAACAC CGTCTCGTTG TCCCATGTAC AGACGGTGAC AAATGTTAAT TAATACAATA
  TAGTACTTGC TGAATGAAAT AAAGCAAGAG TTGAGGAGTC AGAGAAATAA CTCTGTAGGT
  CCCTGACAGT TAGTCATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361384305	MGP_WTSI_4_46150171	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257079219					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361384305	MGP_WTSI_4_46150171	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46137299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	864 bp proximal
Ncbp1	nuclear cap binding protein subunit 1	1433 bp upstream
Rr591548	regulatory region 591548	440 bp proximal
Rr591549	regulatory region 591549	1129 bp proximal
Rr591550	regulatory region 591550	1325 bp proximal
Rr591551	regulatory region 591551	1405 bp proximal
Tssr37109	transcription start site region 37109	1185 bp upstream
Tssr37110	transcription start site region 37110	1230 bp upstream
Tssr37111	transcription start site region 37111	1278 bp upstream
Tssr37112	transcription start site region 37112	1413 bp upstream
Tssr37113	transcription start site region 37113	1522 bp upstream
Tssr41557	transcription start site region 41557	1057 bp downstream
Tssr41558	transcription start site region 41558	1099 bp downstream
Tssr41559	transcription start site region 41559	1368 bp downstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	within coordinates