rs257099709 SNP Detail

Summary

• ID
  rs257099709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100976269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCCCTG GGCCTCGCAC
  GGCCCCGCGC CCGCGGACAA AGCTCTGGAC ATCGGACCGC ACAGTCGCCA CCCCCTGACC
  CCCGGCCGGC CCGCGCGCTC CCGCGCCTAC CCCCTCCCTG GCCTGCGACG CGTACCTCGG
  CATCCCGGCC GGGTCCTAGG TGAGTGTGCG CGGCCTGGGG GGGCGTCCGG CCCAGGGACC
  R
  GGGCGGAAGC GCGGGCCGGG GGCGACGGGC CAGGGCTGGG GGTCAGCGGC GCTCACCATC
  CTGGGGCCGC TGCTGCTGCG GCTGCTGCGG CCGCCGCGGC CGGGAGCGGG ACTGGGCAGT
  GGGGGTGGCC GGACAAGGGG CGGCCCAGGC TCCCCCCGCA GGCAGGACCC CCACCCCGCC
  TCCCCTCGCC CGCCCCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss395190032	MGP_WTSI_15_100908819	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257099709					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395190032	MGP_WTSI_15_100908819	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100976269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	within coordinates
Fignl2	fidgetin-like 2	within coordinates
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	within coordinates
Rr509898	regulatory region 509898	500 bp distal
Rr509899	regulatory region 509899	within coordinates
Rr509900	regulatory region 509900	169 bp proximal
Rr509901	regulatory region 509901	699 bp proximal
Tssr133183	transcription start site region 133183	468 bp downstream
Tssr136514	transcription start site region 136514	8 bp upstream
Tssr136515	transcription start site region 136515	22 bp downstream
Tssr136516	transcription start site region 136516	101 bp downstream
Tssr136517	transcription start site region 136517	419 bp downstream
Tssr136518	transcription start site region 136518	494 bp downstream