rs257101534 SNP Detail

Summary

• ID
  rs257101534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80158096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCGCTGCG GCCACTCACC
  CTGGCACAGC CCCTCTGTGT CCCTCTGCAC ACATGCGCGC GCGCGGCTGG TCACCTGGGG
  GGCCTGGGGC CGTGCTGTCA TGTCCTCGGC CGTCCCATAC AGCAGCAGGG TGTAGTAGTA
  CAGAGTTCCT GGGCGGGGGT CGCAGTGGGC ACCAAGGGGG ACACCTGTCA TTGGCCTGCC
  R
  GGCTCTGTAG CCAGCCTCAC TGTCTCCCAA GCAGGGCCCC GTAGCAACTG TACCTACTAT
  GTGCTAGTGG CCACACCACC TCACATCTCC CAGGTAGGTG GCACCTGGTT TGCACTGGTC
  AGACCATCCC CACAGTTGCT ACACATCTAC TGTGTGCCAG TGGCCAGACC CACTTCTCTT
  AGGTGACTGC ACCTACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381017656	MGP_WTSI_10_79785007	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257101534					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381017656	MGP_WTSI_10_79785007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80158096 () rs orientation: forward

Symbol	Name	Function Class
2310011J03Rik	RIKEN cDNA 2310011J03 gene	1725 bp upstream
Cpgi1870	CpG island 1870	1441 bp distal
Cpgi1871	CpG island 1871	518 bp proximal
Pcsk4	proprotein convertase subtilisin/kexin type 4	within coordinates
Rr402045	regulatory region 402045	1486 bp downstream
Rr435191	regulatory region 435191	1235 bp distal
Rr435192	regulatory region 435192	589 bp proximal
Rr435193	regulatory region 435193	1473 bp proximal
Tssr94549	transcription start site region 94549	1241 bp upstream
Tssr98420	transcription start site region 98420	1709 bp upstream
Tssr98421	transcription start site region 98421	1702 bp upstream
Tssr98422	transcription start site region 98422	774 bp downstream
Tssr98423	transcription start site region 98423	802 bp downstream
Tssr98424	transcription start site region 98424	859 bp downstream
Tssr98425	transcription start site region 98425	1117 bp downstream
Tssr98426	transcription start site region 98426	1494 bp downstream