rs257106901 SNP Detail

Summary

• ID
  rs257106901
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCTTCTT GAACGCGGTC
  AATTTGATTC TTTCTTCATT TTTAAGCATA CACGGAGTGT GTGAGACAAA GTTGTCAAAA
  CTTTCACCCC TGCACAACTC AGTTTAAATC CTGGGACTAA AAGTGTAAAA ACCAGAGGAC
  AAATGACTTT GCATAGACAT ACTAATCAAA ACCCAAAGCA GTGGAGGTAG CTCCCAGGAG
  M
  CCAGGAATGG CTCCTCTACA TCTTCGGAAG TAATTTTCCA TGTGCCTGGC AGGGCGATCT
  TGTTAAAGCA CAGCCTCAGG TTGCCCAAGC TGGGCTTGGA CTCCGTCGGG TTTACAAGCT
  TCATTACTGG AAAGAGTCTA TGGCTCTCCT GGCACCAGCA GCGGCAGAGA TGTTCACCGG
  ACAATGAAAA GTTTCTGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074148	CHEV_9_92436504	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257106901					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423719 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	191 bp proximal
Gm37545	predicted gene, 37545	1583 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	557 bp upstream
Rr684632	regulatory region 684632	67 bp proximal
Rr684633	regulatory region 684633	1252 bp proximal
Rr684634	regulatory region 684634	1379 bp proximal
Tssr86520	transcription start site region 86520	589 bp upstream
Tssr86521	transcription start site region 86521	764 bp upstream