rs257108650 SNP Detail

Summary

• ID
  rs257108650
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105291028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCAAAA AGAATTGCTG
  TGAACCTAGG GGAAGAAGGT AAAACCAAAC AACAAAAGCA GGAAGAAAAC TCTACCCCCT
  TAGGCTTTAG CCACTGCTTC CTAGGAGGTC AGTGACAACA GAACAAAGAC AAGCCTCTAA
  GAATTCAGGA ATGTTGACCA TTTCCCCAAT TTACTCTCTT AGTACTTCCT GCCTTTGTGA
  M
  ATTAGCAATA AAGACTTTAA ACAAAGAAGT GCTTTCTTGT CTTCAGAGTC AGTCAGGAAG
  GCAGCATTGG TCAAACCTCA GGAAGAGAAC TCGAGGGAGA GGGAGATGGT GTTAGGGAGG
  GATGGTTAAA TGCCATCTGT GCCCCTCCTC TTCGGGTTTG ACTGCTTGTC TAATCTAGTT
  TCAGCTCTCT ACCCTGTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370125	CHEV_7_112790335	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257108650					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105291028 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	1405 bp upstream
Cpgi19541	CpG island 19541	600 bp distal
Gm22504	predicted gene, 22504	517 bp downstream
Gm45799	predicted gene 45799	within coordinates
Rr400513	regulatory region 400513	1273 bp downstream
Rr652793	regulatory region 652793	1755 bp distal
Rr652794	regulatory region 652794	1516 bp distal
Rr652795	regulatory region 652795	1221 bp distal
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr2358	transcription start site region 2358	1400 bp downstream
Tssr68382	transcription start site region 68382	1307 bp downstream
Tssr68383	transcription start site region 68383	1235 bp downstream
Tssr68384	transcription start site region 68384	1012 bp downstream
Tssr68385	transcription start site region 68385	794 bp downstream
Tssr68386	transcription start site region 68386	751 bp downstream
Tssr68387	transcription start site region 68387	516 bp upstream
Tssr68388	transcription start site region 68388	794 bp upstream
Tssr74083	transcription start site region 74083	1451 bp upstream