rs257112602 SNP Detail

Summary

• ID
  rs257112602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126293656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAACAGTG TACTCATATA
  CATTAAATAA AAAAATAATT CTTAAAAAAA AAAAAAGCAG AGAGAAGGGA GGGCTGTATG
  TGTATGGAAG TTTGGTCAGG GAAGTTTTAC AGAGACAGGT TGTAGAGAGA ACAAGCTAGA
  CACCGGTGAA GACAAAAGGA GCCAGAGAAT GAGAAGGAGC CAGAAGATTA GAACAGATTG
  Y
  CAAGGCTAGT ATGAGGCCAA GCAGAGCAAT TCAGTCAAAA GCTGAGAGAA GCCGGATTGA
  ATCAGCCATC TTGGAAGAAT AGATTGTACA GAGGTTAGAA GCTTCCAGGG GTAGGCCTAG
  GGATAGTTAG AACAGAGAAA GAAACGCTCT GGCTCAGCCC AAGCCATATA TTCACACAGC
  TTGGGTACGG CTCTCCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373073469	MGP_WTSI_7_133837998	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257112602					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373073469	MGP_WTSI_7_133837998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126293656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bola2	bolA family member 2			1516 bp upstream
Cpgi19704	CpG island 19704			1696 bp distal
Cpgi19705	CpG island 19705			855 bp proximal
Rr368435	regulatory region 368435			1172 bp upstream
Rr400629	regulatory region 400629			802 bp downstream
Rr400630	regulatory region 400630			749 bp upstream
Rr655564	regulatory region 655564			724 bp distal
Rr655565	regulatory region 655565			1033 bp distal
Rr655566	regulatory region 655566			857 bp distal
Rr655567	regulatory region 655567			442 bp proximal
Rr655568	regulatory region 655568			462 bp proximal
Rr655569	regulatory region 655569			770 bp proximal
Rr655570	regulatory region 655570			1274 bp proximal
Rr655571	regulatory region 655571			1290 bp proximal
Rr655572	regulatory region 655572			1481 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr69055	transcription start site region 69055			871 bp upstream
Tssr69056	transcription start site region 69056			1458 bp upstream
Tssr74794	transcription start site region 74794			1230 bp downstream
Tssr74795	transcription start site region 74795			1247 bp downstream