rs257116486 SNP Detail

Summary

• ID
  rs257116486
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGTGATTA AATAGTGAGA CACGACCGGT
  GTGCCAGGGC GTCCAGTACA TACAAACTTC CCGGATACCA GTCTGATCGT GGAGAGCCTT
  TCGTTTATTT GTTTGttagt ttgtttgaga cagggtctca ccattgtaac ccctgggtgg
  M
  ctggaactca ctatttagac caagttggcc tcgaactcat cgagatctgc ctcccgagta
  ctgtgattta aggcgtaaag ctcagtgccc agctCGGAAG TGTATAGGAG AATGGGGAGG
  ATGAATGGCA TGCATATCGA GGCACCTAAC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323731044	CHEV_11_69496152	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257116486					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	357 bp distal
Rr450067	regulatory region 450067	815 bp distal
Rr450068	regulatory region 450068	592 bp distal
Rr450069	regulatory region 450069	76 bp distal
Rr450070	regulatory region 450070	292 bp proximal
Rr450071	regulatory region 450071	1183 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	566 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	196 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	1673 bp upstream
Tssr102520	transcription start site region 102520	1705 bp upstream
Tssr102521	transcription start site region 102521	1746 bp upstream
Tssr102522	transcription start site region 102522	1839 bp upstream
Tssr102523	transcription start site region 102523	1901 bp upstream
Tssr108773	transcription start site region 108773	1985 bp upstream
Tssr108774	transcription start site region 108774	846 bp upstream
Tssr108775	transcription start site region 108775	794 bp upstream
Tssr108776	transcription start site region 108776	754 bp upstream
Tssr108777	transcription start site region 108777	697 bp upstream
Tssr108778	transcription start site region 108778	669 bp upstream
Tssr108779	transcription start site region 108779	645 bp upstream
Tssr108780	transcription start site region 108780	571 bp upstream