rs257118862 SNP Detail

Summary

• ID
  rs257118862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105720939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agttaggag cctgactgct cttccagagg
  tcctgagttc aagtctcagc aactaccttg tgactcacaa ccatctgtaa tgggacccaa
  tgtgctcttc tggtgtgtct gagttcaact acagctactc atataaataa aagtaaataa
  Y
  tcttttaaaa aaatgaaaTC AAAACAATCG CCTAAAGCCA TAGAAATGAA ATCTAGTAAA
  AAAAAAATCG AAGAATAATT AGCAAAGAGT CTTGATTTAA AACAGACACA GGATTGTGGT
  CTCCTTTCAT GGCAGCCTGC TTACCCAGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863264	CHEV_3_105616541	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257118862					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105720939 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1944 bp upstream
Rr582787	regulatory region 582787	1452 bp proximal
Rr582788	regulatory region 582788	1967 bp proximal
Tssr31084	transcription start site region 31084	1907 bp upstream