rs257126716 SNP Detail

Summary

• ID
  rs257126716
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178166736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTCCTG TGTAGATTGC
  ACCCAAGCTA TGCTTGGTGG TACATGTGTA TAATTTCAAC ACTTGGGAGA TACAGGTAAG
  ATGATCAAGA ATTCAGTGTC AGCCAGGCAG GCAGTGGTGA CACCCAAGTT TGGCTCCAGC
  GCTCAGGAAG CAGAGGCACC CCACCCACCC ACCCCCATCC CCTCACCCCC ACCCCCACCC
  T
  GTCTATGAAG CCAGTTCCAG GACAGCCAGA GCTACACAAA GAAACCCTGT CTCAAGCTAA
  GCAACTAAGC AACTCAGTCA ATAAAATTCA TTGTCATCCT TGGCTACAAA AGTTCAAAGC
  CAGTAGGAGA TACCTGAGAC CCTGTCTTTA CAAAAACCAA GCACACCAAA ATGTGAAACT
  ATATATACTG GTGCACTGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss352535494	MGP_WTSI_1_180269302	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs257126716					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535494	MGP_WTSI_1_180269302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178166736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	1087 bp distal
Gm38300	predicted gene, 38300	430 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	1374 bp upstream
Rr20721	regulatory region 20721	1865 bp proximal
Rr29068	regulatory region 29068	335 bp distal
Rr372516	regulatory region 372516	241 bp downstream
Tssr317	transcription start site region 317	1580 bp upstream
Tssr318	transcription start site region 318	1355 bp upstream
Tssr10387	transcription start site region 10387	1993 bp downstream
Tssr10388	transcription start site region 10388	1855 bp downstream
Tssr10389	transcription start site region 10389	1269 bp downstream
Tssr10390	transcription start site region 10390	1184 bp downstream
Tssr10391	transcription start site region 10391	973 bp downstream
Tssr15485	transcription start site region 15485	1999 bp upstream
Tssr15486	transcription start site region 15486	1918 bp upstream
Tssr15487	transcription start site region 15487	1852 bp upstream
Tssr15488	transcription start site region 15488	1519 bp upstream
Tssr15489	transcription start site region 15489	1477 bp upstream
Tssr15490	transcription start site region 15490	1438 bp upstream
Tssr15491	transcription start site region 15491	1410 bp upstream
Tssr15492	transcription start site region 15492	1377 bp upstream