rs257138304 SNP Detail

Summary

• ID
  rs257138304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48532670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAGCCAG GGTCTTCTTC
  CTGAGGGTGG CTTCCAAGAT GCTGCCACAT CTTTGTGTCT CTCTGTTCAG TTCTAGTAGC
  TATCAGAAGC TCCGGTGCTC AGGGTCACCC AAGTGTTCCT CAAGACCAGG ACTGGACCTG
  AATATTCACG TGCTATACAT AGGGGCTGGC TGGCTGTAGC ATCGGATGTA AAATAAAAAT
  Y
  CGTCATGAGG CAGGACAGGA TGCTTACAGA ACAGATACAT CTTTACTGAG CAGGGACTAA
  GTTTAAATAT ATCACCAAGA AGTAGTGTGT GGGCTTCTGT CTAAGCCACT GTCTGTCAGG
  CTACTTGTCA AATCTTTCAC CTGTCAGTGC TTAGCGCTCC GAAGGATTGA ATGATGCCCA
  GCTTATATCC AGAGCCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371266151	MGP_WTSI_7_56138292	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257138304					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266151	MGP_WTSI_7_56138292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48532670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	449 bp distal
E2f8	E2F transcription factor 8	1326 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	1675 bp downstream
Rr400336	regulatory region 400336	972 bp downstream
Rr646937	regulatory region 646937	1892 bp distal
Rr646938	regulatory region 646938	1538 bp distal
Rr646939	regulatory region 646939	1337 bp distal
Rr646940	regulatory region 646940	836 bp distal
Tssr66768	transcription start site region 66768	1557 bp downstream
Tssr66769	transcription start site region 66769	1056 bp downstream
Tssr66770	transcription start site region 66770	1887 bp upstream
Tssr72630	transcription start site region 72630	1932 bp upstream
Tssr72631	transcription start site region 72631	1892 bp upstream
Tssr72632	transcription start site region 72632	1872 bp upstream
Tssr72633	transcription start site region 72633	1303 bp upstream
Tssr72634	transcription start site region 72634	1251 bp upstream
Tssr72635	transcription start site region 72635	568 bp upstream
Tssr72636	transcription start site region 72636	413 bp downstream