rs257141386 SNP Detail

Summary

• ID
  rs257141386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58736217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGTGTCT TAGTCAGGGT
  TTCCATGACT GTGAAGAGAC ACCAGGACCA TGGCAATGCT TTTAGAGGAA AACATTTCAT
  TGAGGCTCAT TTACACTTTT CAGAGGTTTA GTCCATTATC ATCATGGTGG AAAGCATGGC
  GGCATGCAGG TAGACATGGT GCTGGAGAAG AAGCTGAGCA TTTTCCATCT TGCTCCTCAG
  R
  CAGGAAAAGG AGACTGCCAC ACTAGGCCTA GCTTGAGCAT AGGAGACCAC AAAGCCCATC
  TCCACAGTGA CATACTTCCT CCAACAAGGT CACACCTACT CTAATAAGGA CCCAAGAGTG
  CCACTCCCCA TGGCCAAGCA TTCACACACA CTAGTCGATG TGCGCCATTC CTGTTCATAC
  CACTGCTACT AGAAACACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss383530033	MGP_WTSI_11_58658893	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs257141386					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383530033	MGP_WTSI_11_58658893	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58736217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2935	CpG island 2935	1638 bp proximal
Gm12258	predicted gene 12258	1767 bp upstream
Rr246822	regulatory region 246822	1383 bp proximal
Rr402593	regulatory region 402593	1500 bp upstream
Tssr101753	transcription start site region 101753	1762 bp upstream