rs257144570 SNP Detail

Summary

• ID
  rs257144570
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148419923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTAACT CCTTCCCCCA
  GTGGCCTAGA AAAATACACA TCCAAGTCCT CTTTAGGGAA ATGGAAGATC TCTCTGTATC
  CCAGGATACA TTTCTCAGTT TAGCCTGTGG TCTCTAGACT CAGTCGTCGC TTTGAACCTG
  AGGTGACACA GAGAGATAAT CGTGGTTGCC TGTAGTAGAG GAGGCGGTTC CCCTCATGGT
  S
  GTGGGGGGGG GGGGGAAGCA GGGAGGAAGG GGCTAAGGAG AAGGAAGCTC TTAACAGGGC
  CCAGCACCAG AGATCCATTC TCTAACTAAA CCCCACCTCC TTCCTTTCCT GAGCTCCCAA
  CAGCATCAAA GAGAGATTGG TTGACTGATG AGGTCAGAGG TTTTTTTAGT TTTTGGTTTT
  GGCCTTTGGC TCCAGAAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	MOLF/EiJ	SEA/GnJ
ss363613766	MGP_WTSI_4_147709575	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	MOLF/EiJ	SEA/GnJ
rs257144570					SNP	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363613766	MGP_WTSI_4_147709575	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148419923 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	278 bp proximal
Tssr40270	transcription start site region 40270	1981 bp downstream