AGGAGAGAGG TCTGGTTACG TACTGGTAGG TTGAAATGTT GGAAGAGATG GAGATGGATT ACTTGGCAAC AACTGAAAAC GCAGACATGA GCCTTTGGGA TGCCTTTTTC AGGCTGGGCC TCTGCCTTTG GGGAAGTGTG GAAGAGGATT TTGATTCTAG GATGGGGTCT GAAATGCTAA ATTTTTTGTT GTCTGAATCA Y TGGTATTAGG TACCAAGCAT ACCAATTTAA CAGGTTAGCT ATCTATTTTT CAGACCTGAT TTGAATTTCT TGAAAGAATT TTGGGATGTT TTTGAATGCA TTACATTGAA CTACACTGGC AGCATAGTGT GGAATGAAAG CGAACCAATA CCATCCAGTC CCACAGGCTG AATTTAAGCA TAACTGTAGT AAAAGAATGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss353155416 | MGP_WTSI_2_13996640 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs257161834 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss353155416 | MGP_WTSI_2_13996640 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr2:14079824 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11218 | CpG island 11218 | 312 bp distal | ||||||
Gm57420 | predicted gene, 57420 | 960 bp downstream | ||||||
Rr55715 | regulatory region 55715 | within coordinates | ||||||
Stam | signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 | within coordinates | ||||||
Stamos | signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand | 1079 bp upstream | ||||||
Tssr16223 | transcription start site region 16223 | 1388 bp downstream | ||||||
Tssr16224 | transcription start site region 16224 | 1341 bp downstream | ||||||
Tssr16225 | transcription start site region 16225 | 867 bp downstream | ||||||
Tssr16226 | transcription start site region 16226 | 822 bp downstream | ||||||
Tssr16227 | transcription start site region 16227 | 778 bp downstream | ||||||
Tssr22732 | transcription start site region 22732 | 1146 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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