rs257170585 SNP Detail

Summary

• ID
  rs257170585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149720392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT CCAGCGCTTG GGAGGCAGAG
  R
  CAGAGGCAGG CAGATTTCTG AGTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321426352	CHEV_4_149010044	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257170585					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149720392 () rs orientation: forward

Symbol	Name	Function Class
Clstn1	calsyntenin 1	within coordinates
Gm70063	predicted gene, 70063	1117 bp upstream
Rr103738	regulatory region 103738	592 bp distal
Rr103739	regulatory region 103739	209 bp proximal
Tssr40351	transcription start site region 40351	1224 bp downstream
Tssr40352	transcription start site region 40352	683 bp downstream
Tssr40353	transcription start site region 40353	1465 bp upstream