rs257185492 SNP Detail

Summary

• ID
  rs257185492
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53531530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTACAGCG CCTGCACCAT
  CTCCACCAGC ACCCACTGCT CCGCCACTGT CGCCATGGTC AGGCAGCCGA CTTCCGGCAG
  GCGGGTCGCA GCGTGTCAAA TAGTGCGCGG CGCGAGCTAG TGACGCAATG AAGCGGGGGG
  GGGGGAGAGG CGGGACTGCC GGAAGTGGGG CGGGGCCTCC TCGTTCGGGT GTGCTCGTTC
  S
  GGTGTGAAGT GCTTGGACTC GATTGGTAAA GACAGAATCC CTGAGACTTG TATAGCGACA
  GGCCGTGGAC TTTGTGCTAG GAGAATTAGC TCGTGGTCCT TGTCCTGGGC AGTCGTCTGG
  GCCCAGAGTT ATTAAGATGA ACGAAATTAG GCCGGGCATG GCGGTACAGG CCTTAAATCG
  TATTTGGGAG GCAAAAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324341587	CHEV_13_53472863	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257185492					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53531530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	within coordinates
Rr403780	regulatory region 403780	within coordinates
Rr480032	regulatory region 480032	within coordinates
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	129 bp upstream
Tssr122583	transcription start site region 122583	121 bp upstream