rs257186801 SNP Detail

Summary

• ID
  rs257186801
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79132679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATCGGTC ATTTGCTCCT
  CCAGCAAATA TTGGAGTGGG CGAGGGAAAC AGGTGCCTGG GGTCAGAGAC ACATTTGCAA
  AGTTTCAGAA TCAATTCAAG AAACAAAATA GCCCTGGTAC CGAGTTCACT GGCCTCTGAA
  TAAGGTTTAA AGTGGGGCTT TGATGATACA ACTAAGACTG AAGAGAACTG TTACAGCCGA
  G
  TTCAATGAAA CAGAGAGCTG TTCATTTTAC ATTTTTGTTA GGGATTCTAA CTTTATACAA
  ATTCTTCAAA TCTATATATA CTGAAAGCCA ATGTTGGGTT ACTAACTGAA ATAATTCATG
  TGGTACTCAC CCAAACTCCA TCAGAAGGTC TCCATTGTGT GGATCCCAGA CATACACACG
  AGTGTCATAG GATGCAGTAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759388	CHEV_11_79055355	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257186801					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79132679 () rs orientation: forward

Symbol	Name	Function Class
Gm30470	predicted gene, 30470	within coordinates
Tssr109468	transcription start site region 109468	1939 bp upstream
Tssr109469	transcription start site region 109469	638 bp downstream
Tssr109470	transcription start site region 109470	1461 bp downstream
Tssr109471	transcription start site region 109471	1528 bp downstream
Tssr109472	transcription start site region 109472	1603 bp downstream
Wsb1	WD repeat and SOCS box-containing 1	within coordinates