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rs257187321 SNP Detail
Summary
  • ID
    rs257187321
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:192341865 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      GTGTTACCT AGCAAGTTCC TGGTGTCCAC
    ACCCAGGGTG GGAGGTGAGG AGCTGCAGTT CCAAGACCCT AGGTTCCACG CCCAGCATGG
    GAGGTGAGGG GCTGCTGTTC CAAGACCCTG GTGTCCACGC CCAGCATGGG AGGTGAGGGG
    Y
    TGCTGTTCCA AGTCCCTGGT GTCCACACTC AGCATGGGAG GTGAGGGGCT GCTGTTCCAA
    GACCCTGGTG TCCACGCCCA GCCTGGGAGG TGAGAGGCTG CTGTTCCAAG ACCCTGGTGT
    CCACCCTCAG CATAGGAGGT GAGGGGCTGC                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320199401 CHEV_1_194483439 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs257187321 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:192341865 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hhat hedgehog acyltransferase Intron
Noncoding-Transcript-Variant
Rr426372 regulatory region 426372 858 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory