rs257208462 SNP Detail

Summary

• ID
  rs257208462
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63285215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAGGGG GGCCCAGGGC
  CGCGGGGTCA AGGGGCGGGT CCCGGACCGC AGCCGGAACC GGAGGGCGCG GCGCGTGCAG
  GATCGTCCGA CTGAGGCCCG CGTCCCGGCA GCGGAGGTGG CGGCGAGAGG AGGAGGAAGG
  CGGCCGTTAG ACCGCTGTTA CTCCGGAACC AAAACGCGAT GGCGCCGGAA CCCGGGGAGC
  S
  GACATGTGGG ACCCGCCTCC TGGGGCGCCA TGTTGGAAGA GGGCAGCTGG GGCGGAGCAG
  GGATCTCGTG CTAGGACTGG CTGACTTCCA TCTCTTCAGG TAGTGGTAAA GGAGCCTAGA
  AAACCCAGGA AGACACGGAT CTACGGCTGG GGGCTGTCCG TAAAACAATT TAAGGTTTGA
  TCATGCAGAA AAGGCGGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377820300	MGP_WTSI_9_63225740	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	G	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257208462					SNP	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	G	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377820300	MGP_WTSI_9_63225740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63285215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	within coordinates
Map2k5	mitogen-activated protein kinase kinase 5	31 bp upstream
Rr401444	regulatory region 401444	within coordinates
Rr680973	regulatory region 680973	within coordinates
Tssr90089	transcription start site region 90089	167 bp upstream
Tssr90090	transcription start site region 90090	104 bp upstream
Tssr90091	transcription start site region 90091	19 bp upstream
Tssr90092	transcription start site region 90092	27 bp downstream