rs257218025 SNP Detail

Summary

• ID
  rs257218025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43629158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCTCTCA GAAGGGAGTG TTGCTGCAAC
  AGGAAGTTTT CACCACAGCT TTCGTTGCCA CTGACCTACG GAACGTCGTC TCGTAAATAC
  ACCTCTTGCT GCTTCTGCTT CTCTCATCCG AGAGTGAAAT ATTTAGAATT CTCAAAATGA
  Y
  GCCCGGGGCG CAGAAGGCAG ACCCATGGTT TTTGAGACCT GACCGGTGTA CATGACCCAC
  GGCCCTGAGG CCTTAAGAAG CCATTCTGAG GCTAGAGTTG CCTCTGAAGA ATTTTACTTT
  GTAAACATTT AAATAAATTA CATGAGTAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269128	CHEV_2_43594666	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257218025					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43629158 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	1551 bp downstream
Rr556296	regulatory region 556296	925 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	378 bp upstream
Tssr23873	transcription start site region 23873	466 bp upstream
Tssr23874	transcription start site region 23874	117 bp upstream