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rs257241083 SNP Detail
Summary
  • ID
    rs257241083
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr4:156077280 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCGAGAGGC CGCCGAGGAG
    CGCAGGCGCG GACGCTGGAA GGCGCCTGCG CGACTCGGAC GCTGGAAGGC GCCTGCGCGA
    CTCGGAGGCT GGAAGGCGCC TGCGCGACTC GGAGGCTGGA AGGCGCCTGC GCGACTCGGA
    GACTGGAAGG CGCCTGCGCG ACTCGACTCG GAGACTGGAA GGCGCCTGCG CGACTCGACT
    C
    GGAGACTGGA AGGCGCCTGC GCGACTCGGA GACTGGAAGG CTCGGAGGCT GGAAGGCGCC
    TGCGCGACTC GGACGCTGGA AGGCGCCTGC GCGACTCGGA CGCTGGAAGG CGCCTGCGCG
    ACTCGACTCG GACGCTGGAA GGCGCCTGCG CGACTCGGAG ACTGGCGCGG CCGGTTAGGC
    CTGGTAACGT GGGAGGAGCC                                            
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363809037 MGP_WTSI_4_155366932 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257241083 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363809037 MGP_WTSI_4_155366932 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:156077280 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
B3galt6 UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6 174 bp upstream
Cpgi15496 CpG island 15496 within coordinates
Rr377473 regulatory region 377473 within coordinates
Rr606629 regulatory region 606629 1461 bp distal
Rr606630 regulatory region 606630 228 bp distal
Rr606631 regulatory region 606631 within coordinates
Rr606632 regulatory region 606632 125 bp distal
Rr606633 regulatory region 606633 69 bp proximal
Rr606634 regulatory region 606634 430 bp proximal
Rr606635 regulatory region 606635 565 bp proximal
Sdf4 stromal cell derived factor 4 49 bp upstream
Tssr1404 transcription start site region 1404 116 bp upstream
Tssr40748 transcription start site region 40748 410 bp downstream
Tssr40749 transcription start site region 40749 320 bp upstream
Tssr40750 transcription start site region 40750 407 bp upstream
Tssr40751 transcription start site region 40751 482 bp upstream
Tssr40752 transcription start site region 40752 625 bp upstream
Tssr44987 transcription start site region 44987 481 bp upstream
Tssr44988 transcription start site region 44988 149 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory