rs257247624 SNP Detail

Summary

• ID
  rs257247624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:88949061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCAGGAAC GGCCACGCCC CCACGTGCTC
  TCGCGTCCAA TCGGTGCCAG AGGGAGGGGC AGCCTTGCTC TCGCTCCACT GAAACTATAA
  AGGGACCTGC GGGGAAAGCT GTAGGTTACT CTTTTAGGCC GCCCAGTGAC CAAGCAAAAT
  R
  TGGGGTTGCA GAATAAATAC AGATGCTCCG GTTCTGCGGA GCAGCCCTCG GGACTTGAGC
  TTAGGGTACG GGTGTAAACT ACCTGGGAGA AGTGCGCAGC AGCAAAAGAG ATTTCGGGAT
  TGGAGCTTAG GTCCCTTCCC GGGGAGATTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323064212	CHEV_9_88961846	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257247624					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:88949061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22121	CpG island 22121	198 bp distal
Gm68594	predicted gene, 68594	141 bp upstream
Rr684355	regulatory region 684355	293 bp distal
Rr684356	regulatory region 684356	185 bp distal
Rr684357	regulatory region 684357	20 bp distal
Rr684358	regulatory region 684358	within coordinates
Tssr86421	transcription start site region 86421	32 bp downstream
Tssr86422	transcription start site region 86422	39 bp upstream