rs257253591 SNP Detail

Summary

• ID
  rs257253591
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:39631174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcaagaaaa tatcagccaa aaatcaggtt
  agaagtttaa cagtatctgc ctgttttgct gagctgaata ttaactaaat gtttatttgt
  agactgactt taccaaagat gttgtattga accataggat ggccgtcaaa acaagcaggg
  S
  aaagattatt gaaatcattc tttgaaaatc agttggccat acagaagtta ctcttaaagg
  ttattctata ccttatgtat tataaattgt gtgatgcaaa tttatttcaa tgagtttata
  aaaaTAGATT TCCCCCTCTC ACCTAAATGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325590049	CHEV_18_39657775	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257253591					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:39631174 () rs orientation: forward

Symbol	Name	Function Class
Nr3c1	nuclear receptor subfamily 3, group C, member 1	within coordinates
Tssr150833	transcription start site region 150833	1377 bp downstream
Tssr150834	transcription start site region 150834	1358 bp downstream
Tssr153089	transcription start site region 153089	1521 bp upstream