rs257254293 SNP Detail

Summary

• ID
  rs257254293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATTGAT CGTCCCTGCT
  GTTACTAGAA TTGCGAGCCA GACCCTGGGC TCTGAGAATC TAATAAACCA GGTTAGTCAC
  CATCCTTAAT AAGTCGATTA AACAAGTAAT GGTAAGATAT AGAAAAAGGA GATTTATTCA
  ATACGGCCAC ATTGGGAAGA GGGACAAAGA GAAGTCTTAT CTTCTGAGTT CTAATATGAA
  R
  CTGAGGTTTA AGTAAAGAGT CAGACTTGAT ATAGAGTTGA ACAGTGAAGG TCGAGGTGTG
  GACCTGTCCA TTACTGTCTT GGCTTCAGTC CTGCAAGGTG ATCTCTGAAA TCTCTTTCCC
  CGGAAACAAA TTTCTACTCT GGCTGGTGGA AAAGCAATTC CCTGGAGTGC TTCCTCCGCA
  GATGGCTAAC CAGAGGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104754	CHEV_12_77355636	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257254293					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	238 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	649 bp upstream
Rr403350	regulatory region 403350	396 bp upstream
Rr468112	regulatory region 468112	159 bp proximal
Rr468113	regulatory region 468113	1078 bp proximal
Tssr113934	transcription start site region 113934	560 bp upstream
Tssr113935	transcription start site region 113935	595 bp upstream
Tssr113936	transcription start site region 113936	641 bp upstream
Tssr113937	transcription start site region 113937	683 bp upstream
Tssr113938	transcription start site region 113938	699 bp upstream
Tssr113939	transcription start site region 113939	722 bp upstream
Tssr113940	transcription start site region 113940	804 bp upstream
Tssr113941	transcription start site region 113941	834 bp upstream
Tssr116711	transcription start site region 116711	397 bp downstream
Tssr116712	transcription start site region 116712	423 bp downstream