rs257260190 SNP Detail

Summary

• ID
  rs257260190
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGTTAT GTCCAATAAT
  TAAGCAAAAA CCAAATACTC TACCGGGCAG TGGTGGAGCA CACCTTTAAT CCCAGCACTT
  GGGAGTCAGA GGCAGGTGGA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA GAGTGAGTTC
  CAGAACAGCC AGGGCTACAC AGAGAAACCC TGTCTCCAAA AAAAAAAAAA AAAACAAAAA
  M
  AAAAAACACT TTGACAACTA AGTTCCAATT TTCTCTAGCC TTACTGAACT CATATACATA
  AATTATATAT ATATATATAA TATTTTTTTT GTTTTGGTTT TTTTTTTTTT TTTTTTTTTT
  TTTTTTTTTT GGTTTTTCGA GACAGGGTTT CTCTGTATAG CCCTGGCTGT CCTGGAACTC
  ACTTTGTAGA CCAGACTGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	MA/MyJ	RIIIS/J	SJL/J
ss381242980	MGP_WTSI_10_90544313	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	MA/MyJ	RIIIS/J	SJL/J
rs257260190					SNP	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381242980	MGP_WTSI_10_90544313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917430 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	615 bp proximal
Ikbip	IKBKB interacting protein	1372 bp upstream
Rr402144	regulatory region 402144	1286 bp upstream
Rr436975	regulatory region 436975	1783 bp distal
Rr436976	regulatory region 436976	167 bp proximal
Rr436977	regulatory region 436977	851 bp proximal
Tssr95222	transcription start site region 95222	523 bp upstream
Tssr95223	transcription start site region 95223	1456 bp upstream
Tssr95224	transcription start site region 95224	1468 bp upstream
Tssr95225	transcription start site region 95225	1513 bp upstream
Tssr98900	transcription start site region 98900	988 bp downstream
Tssr98901	transcription start site region 98901	1085 bp downstream
Tssr98902	transcription start site region 98902	1115 bp downstream
Tssr98903	transcription start site region 98903	1136 bp downstream
Tssr98904	transcription start site region 98904	1215 bp downstream