rs257261058 SNP Detail

Summary

• ID
  rs257261058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56837378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCAAAG ATACATAGCA
  AGACTGTCTC AAATTAAAAA TTGAAAGATC TTGAGCATGC CAAACAGTCT TAGCACTTGG
  AAGGCAGAGA TCACACATCT GAGGCTATCC TCGAGCCTAT GTAAGGTGGG GGAGGGGGTT
  GTCACAAAGT TGGGTGTTAT GGTACATCCC TGTAACCCAA GCCCTTGGAA ACAAAGGCAA
  R
  TTTTAGCTCA GCTTTGTCTA TGTAGTAAAT TTAGGACAGC TAAAGCTACA AGTGAGACCC
  TGACTTAAAA AAACAAAAAG CTCAAACCCT AGAATCTGAG AAACAGTTGT GAAGCAAAAC
  TTTTGCTTTA CTAGATCAAG AGTTGGGTCT GCTCCTTGGG ATGCACATGG GCCAGGCTAG
  CCCATGAGGC TGATGCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377679387	MGP_WTSI_9_56777901	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257261058					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377679387	MGP_WTSI_9_56777901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56837378 () rs orientation: forward

Symbol	Name	Function Class
4930442G15Rik	RIKEN cDNA 4930442G15 gene	1518 bp upstream
Cpgi21803	CpG island 21803	1401 bp distal
Gm70242	predicted gene, 70242	1286 bp downstream
Rr368760	regulatory region 368760	1573 bp downstream
Rr401388	regulatory region 401388	1826 bp downstream
Rr679548	regulatory region 679548	1734 bp distal
Rr679551	regulatory region 679551	1877 bp distal
Rr679552	regulatory region 679552	1233 bp distal
Rr679553	regulatory region 679553	1690 bp distal
Snx33	sorting nexin 33	1723 bp upstream
Tssr89747	transcription start site region 89747	1972 bp upstream
Tssr89748	transcription start site region 89748	1933 bp upstream
Tssr89749	transcription start site region 89749	1780 bp upstream
Tssr89750	transcription start site region 89750	1702 bp upstream