rs257271286 SNP Detail

Summary

• ID
  rs257271286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87612726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGAGCCG GGCGGAGACG
  CACCGGGAAG CCGCTGGGGC AGGAAGGGAT CGATCGACTC ACCCGCCGCT CCGCGGGAGC
  CACAGCTCCG CTCCGCGTCC GCGCAGCTCC GCGCTGGCCC GGACGCCGCC CCGGCTGCCG
  GCGGCGGGGC AGCCGCTTCT TCGTCGGCCT CCGAGCAGCC GTGCTCCCCC GCGCCTCCGC
  Y
  ACGGCTGCAG CCTGCGTCTT CCACCGCCCC CGCCGCCTCT TCCGTGGCCA GCTTTCTCCG
  CTTCTTTTGA AGCTGTTGCT GCTTCTCGGC GCCGATCAGT GCCTCCACAG AGAAGGCGTG
  CGCCTTGAGG CTTAGCATGC TGCACGGTGA GCCCCTCCGC TTCTCCGCCA TCCCCGCCTC
  CCCGAGCCCG CTCGCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378383630	MGP_WTSI_9_87625508	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257271286					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378383630	MGP_WTSI_9_87625508	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87612726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	within coordinates
D030062O11Rik	RIKEN cDNA D030062O11 gene	within coordinates
Gm69731	predicted gene, 69731	1594 bp downstream
Rr684220	regulatory region 684220	577 bp proximal
Rr684221	regulatory region 684221	740 bp proximal
Rr684222	regulatory region 684222	1594 bp proximal
Tbx18	T-box18	within coordinates
Tssr2959	transcription start site region 2959	564 bp downstream
Tssr90806	transcription start site region 90806	463 bp downstream
Tssr90807	transcription start site region 90807	490 bp downstream
Tssr90808	transcription start site region 90808	575 bp downstream
Tssr90809	transcription start site region 90809	601 bp downstream